python stack traces on login and after apt-get update
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After my latest dist-upgrade, I'm now getting python stack traces on logging in/starting bash:
Last login: Wed Nov 28 19:33:57 2018 from x.x.x.x
Traceback (most recent call last):
File "/usr/lib/command-not-found", line 28, in <module>
from CommandNotFound import CommandNotFound
File "/usr/lib/python3/dist-packages/CommandNotFound/CommandNotFound.py", line 19, in <module>
from CommandNotFound.db.db import SqliteDatabase
File "/usr/lib/python3/dist-packages/CommandNotFound/db/db.py", line 3, in <module>
import sqlite3
File "/usr/lib/python3.6/sqlite3/__init__.py", line 23, in <module>
from sqlite3.dbapi2 import *
File "/usr/lib/python3.6/sqlite3/dbapi2.py", line 27, in <module>
from _sqlite3 import *
ImportError: /usr/lib/python3.6/lib-dynload/_sqlite3.cpython-36m-i386-linux-gnu.so: undefined symbol: sqlite3_transfer_bindings
I should note that I'm using the stock .bashrc that came with Ubuntu; the only thing I've changed is adding aliases for my preferred "ls" switches.
I'm also getting similar errors when trying to run apt-get update:
Hit:1 http://us.archive.ubuntu.com/ubuntu bionic InRelease
Hit:2 http://security.ubuntu.com/ubuntu bionic-security InRelease
Hit:3 http://us.archive.ubuntu.com/ubuntu bionic-updates InRelease
Hit:4 http://us.archive.ubuntu.com/ubuntu bionic-backports InRelease
Traceback (most recent call last):
File "/usr/lib/cnf-update-db", line 8, in <module>
from CommandNotFound.db.creator import DbCreator
File "/usr/lib/python3/dist-packages/CommandNotFound/db/creator.py", line 7, in <module>
import sqlite3
File "/usr/lib/python3.6/sqlite3/__init__.py", line 23, in <module>
from sqlite3.dbapi2 import *
File "/usr/lib/python3.6/sqlite3/dbapi2.py", line 27, in <module>
from _sqlite3 import *
ImportError: /usr/lib/python3.6/lib-dynload/_sqlite3.cpython-36m-i386-linux-gnu.so: undefined symbol: sqlite3_transfer_bindings
Reading package lists... Done
E: Problem executing scripts APT::Update::Post-Invoke-Success 'if /usr/bin/test -w /var/lib/command-not-found/ -a -e /usr/lib/cnf-update-db; then /usr/lib/cnf-update-db > /dev/null; fi'
E: Sub-process returned an error code
I tried apt-get install --reinstall command-not-found but to no avail. I'm rubbish at following stack traces and could use some help. Thanks very much in advance.
apt bash updates bashrc
asked Nov 30 at 6:20
Nick
11
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add a comment |
up vote
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After my latest dist-upgrade, I'm now getting python stack traces on logging in/starting bash:
Last login: Wed Nov 28 19:33:57 2018 from x.x.x.x
Traceback (most recent call last):
File "/usr/lib/command-not-found", line 28, in <module>
from CommandNotFound import CommandNotFound
File "/usr/lib/python3/dist-packages/CommandNotFound/CommandNotFound.py", line 19, in <module>
from CommandNotFound.db.db import SqliteDatabase
File "/usr/lib/python3/dist-packages/CommandNotFound/db/db.py", line 3, in <module>
import sqlite3
File "/usr/lib/python3.6/sqlite3/__init__.py", line 23, in <module>
from sqlite3.dbapi2 import *
File "/usr/lib/python3.6/sqlite3/dbapi2.py", line 27, in <module>
from _sqlite3 import *
ImportError: /usr/lib/python3.6/lib-dynload/_sqlite3.cpython-36m-i386-linux-gnu.so: undefined symbol: sqlite3_transfer_bindings
I should note that I'm using the stock .bashrc that came with Ubuntu; the only thing I've changed is adding aliases for my preferred "ls" switches.
I'm also getting similar errors when trying to run apt-get update:
Hit:1 http://us.archive.ubuntu.com/ubuntu bionic InRelease
Hit:2 http://security.ubuntu.com/ubuntu bionic-security InRelease
Hit:3 http://us.archive.ubuntu.com/ubuntu bionic-updates InRelease
Hit:4 http://us.archive.ubuntu.com/ubuntu bionic-backports InRelease
Traceback (most recent call last):
File "/usr/lib/cnf-update-db", line 8, in <module>
from CommandNotFound.db.creator import DbCreator
File "/usr/lib/python3/dist-packages/CommandNotFound/db/creator.py", line 7, in <module>
import sqlite3
File "/usr/lib/python3.6/sqlite3/__init__.py", line 23, in <module>
from sqlite3.dbapi2 import *
File "/usr/lib/python3.6/sqlite3/dbapi2.py", line 27, in <module>
from _sqlite3 import *
ImportError: /usr/lib/python3.6/lib-dynload/_sqlite3.cpython-36m-i386-linux-gnu.so: undefined symbol: sqlite3_transfer_bindings
Reading package lists... Done
E: Problem executing scripts APT::Update::Post-Invoke-Success 'if /usr/bin/test -w /var/lib/command-not-found/ -a -e /usr/lib/cnf-update-db; then /usr/lib/cnf-update-db > /dev/null; fi'
E: Sub-process returned an error code
I tried apt-get install --reinstall command-not-found but to no avail. I'm rubbish at following stack traces and could use some help. Thanks very much in advance.
apt bash updates bashrc
asked Nov 30 at 6:20
Nick
11
New contributor
Nick is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
Have you made any changes to your Python 3 setup?
– wjandrea
Nov 30 at 17:44
Nope. This morning I tried reinstalling python 3.6 (which completed successfully; didn't fix the problem), but I haven't made any config changes.
– Nick
Nov 30 at 18:52
Though I suppose Plex could have made changes on its own..
– Nick
Nov 30 at 18:52
add a comment |
up vote
0
down vote
favorite
up vote
0
down vote
favorite
After my latest dist-upgrade, I'm now getting python stack traces on logging in/starting bash:
Last login: Wed Nov 28 19:33:57 2018 from x.x.x.x
Traceback (most recent call last):
File "/usr/lib/command-not-found", line 28, in <module>
from CommandNotFound import CommandNotFound
File "/usr/lib/python3/dist-packages/CommandNotFound/CommandNotFound.py", line 19, in <module>
from CommandNotFound.db.db import SqliteDatabase
File "/usr/lib/python3/dist-packages/CommandNotFound/db/db.py", line 3, in <module>
import sqlite3
File "/usr/lib/python3.6/sqlite3/__init__.py", line 23, in <module>
from sqlite3.dbapi2 import *
File "/usr/lib/python3.6/sqlite3/dbapi2.py", line 27, in <module>
from _sqlite3 import *
ImportError: /usr/lib/python3.6/lib-dynload/_sqlite3.cpython-36m-i386-linux-gnu.so: undefined symbol: sqlite3_transfer_bindings
I should note that I'm using the stock .bashrc that came with Ubuntu; the only thing I've changed is adding aliases for my preferred "ls" switches.
I'm also getting similar errors when trying to run apt-get update:
Hit:1 http://us.archive.ubuntu.com/ubuntu bionic InRelease
Hit:2 http://security.ubuntu.com/ubuntu bionic-security InRelease
Hit:3 http://us.archive.ubuntu.com/ubuntu bionic-updates InRelease
Hit:4 http://us.archive.ubuntu.com/ubuntu bionic-backports InRelease
Traceback (most recent call last):
File "/usr/lib/cnf-update-db", line 8, in <module>
from CommandNotFound.db.creator import DbCreator
File "/usr/lib/python3/dist-packages/CommandNotFound/db/creator.py", line 7, in <module>
import sqlite3
File "/usr/lib/python3.6/sqlite3/__init__.py", line 23, in <module>
from sqlite3.dbapi2 import *
File "/usr/lib/python3.6/sqlite3/dbapi2.py", line 27, in <module>
from _sqlite3 import *
ImportError: /usr/lib/python3.6/lib-dynload/_sqlite3.cpython-36m-i386-linux-gnu.so: undefined symbol: sqlite3_transfer_bindings
Reading package lists... Done
E: Problem executing scripts APT::Update::Post-Invoke-Success 'if /usr/bin/test -w /var/lib/command-not-found/ -a -e /usr/lib/cnf-update-db; then /usr/lib/cnf-update-db > /dev/null; fi'
E: Sub-process returned an error code
I tried apt-get install --reinstall command-not-found but to no avail. I'm rubbish at following stack traces and could use some help. Thanks very much in advance.
apt bash updates bashrc
asked Nov 30 at 6:20
Nick
11
New contributor
Nick is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
After my latest dist-upgrade, I'm now getting python stack traces on logging in/starting bash:
Last login: Wed Nov 28 19:33:57 2018 from x.x.x.x
Traceback (most recent call last):
File "/usr/lib/command-not-found", line 28, in <module>
from CommandNotFound import CommandNotFound
File "/usr/lib/python3/dist-packages/CommandNotFound/CommandNotFound.py", line 19, in <module>
from CommandNotFound.db.db import SqliteDatabase
File "/usr/lib/python3/dist-packages/CommandNotFound/db/db.py", line 3, in <module>
import sqlite3
File "/usr/lib/python3.6/sqlite3/__init__.py", line 23, in <module>
from sqlite3.dbapi2 import *
File "/usr/lib/python3.6/sqlite3/dbapi2.py", line 27, in <module>
from _sqlite3 import *
ImportError: /usr/lib/python3.6/lib-dynload/_sqlite3.cpython-36m-i386-linux-gnu.so: undefined symbol: sqlite3_transfer_bindings
I should note that I'm using the stock .bashrc that came with Ubuntu; the only thing I've changed is adding aliases for my preferred "ls" switches.
I'm also getting similar errors when trying to run apt-get update:
Hit:1 http://us.archive.ubuntu.com/ubuntu bionic InRelease
Hit:2 http://security.ubuntu.com/ubuntu bionic-security InRelease
Hit:3 http://us.archive.ubuntu.com/ubuntu bionic-updates InRelease
Hit:4 http://us.archive.ubuntu.com/ubuntu bionic-backports InRelease
Traceback (most recent call last):
File "/usr/lib/cnf-update-db", line 8, in <module>
from CommandNotFound.db.creator import DbCreator
File "/usr/lib/python3/dist-packages/CommandNotFound/db/creator.py", line 7, in <module>
import sqlite3
File "/usr/lib/python3.6/sqlite3/__init__.py", line 23, in <module>
from sqlite3.dbapi2 import *
File "/usr/lib/python3.6/sqlite3/dbapi2.py", line 27, in <module>
from _sqlite3 import *
ImportError: /usr/lib/python3.6/lib-dynload/_sqlite3.cpython-36m-i386-linux-gnu.so: undefined symbol: sqlite3_transfer_bindings
Reading package lists... Done
E: Problem executing scripts APT::Update::Post-Invoke-Success 'if /usr/bin/test -w /var/lib/command-not-found/ -a -e /usr/lib/cnf-update-db; then /usr/lib/cnf-update-db > /dev/null; fi'
E: Sub-process returned an error code
I tried apt-get install --reinstall command-not-found but to no avail. I'm rubbish at following stack traces and could use some help. Thanks very much in advance.
apt bash updates bashrc
apt bash updates bashrc
asked Nov 30 at 6:20
Nick
11
New contributor
Nick is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
asked Nov 30 at 6:20
Nick
11
New contributor
Nick is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
edited Nov 30 at 17:06
asked Nov 30 at 6:20
Nick
11
New contributor
Nick is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
asked Nov 30 at 6:20
Nick
11
asked Nov 30 at 6:20
Nick
11
11
New contributor
Nick is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
New contributor
Nick is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
Nick is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
Have you made any changes to your Python 3 setup?
– wjandrea
Nov 30 at 17:44
Nope. This morning I tried reinstalling python 3.6 (which completed successfully; didn't fix the problem), but I haven't made any config changes.
– Nick
Nov 30 at 18:52
Though I suppose Plex could have made changes on its own..
– Nick
Nov 30 at 18:52
add a comment |
Have you made any changes to your Python 3 setup?
– wjandrea
Nov 30 at 17:44
Nope. This morning I tried reinstalling python 3.6 (which completed successfully; didn't fix the problem), but I haven't made any config changes.
– Nick
Nov 30 at 18:52
Though I suppose Plex could have made changes on its own..
– Nick
Nov 30 at 18:52
Have you made any changes to your Python 3 setup?
– wjandrea
Nov 30 at 17:44
Have you made any changes to your Python 3 setup?
– wjandrea
Nov 30 at 17:44
Nope. This morning I tried reinstalling python 3.6 (which completed successfully; didn't fix the problem), but I haven't made any config changes.
– Nick
Nov 30 at 18:52
Nope. This morning I tried reinstalling python 3.6 (which completed successfully; didn't fix the problem), but I haven't made any config changes.
– Nick
Nov 30 at 18:52
Though I suppose Plex could have made changes on its own..
– Nick
Nov 30 at 18:52
Though I suppose Plex could have made changes on its own..
– Nick
Nov 30 at 18:52
add a comment |
1 Answer
1
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votes
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0
down vote
I'm no expert but I was running into the same undefined symbol trying to start sickbeard so I ran the following command as root:
scanelf -l -s sqlite3_transfer_bindings /lib/* /usr/* /opt/* | grep sqlite3_transfer_bindings
Which gave me this output:
ET_DYN sqlite3_transfer_bindings /usr/lib/i386-linux-gnu/libsqlite3.so.0.8.6
ET_DYN sqlite3_transfer_bindings /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6
So I set $LD_LIBRARY_PATH for my sickbeard user to equal /usr/lib/x86_64-linux-gnu
And I was able to run sickbeard.
So presumably you can run the same command and then adjust your LD_LIBRARY_PATH value accordingly.
answered Dec 1 at 23:59
TheDudeguy
1
New contributor
TheDudeguy is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
This worked (mostly)! I was having sudo-ing some of the plex commands a few days ago trying to force a media library update and messed with letting LD_LIBRARY_PATH. This appears to be the root of all of my problems. I've got most of it fixed, but I'm still getting errors when I type a command that doesn't exist (command-not-found is definitely still broken).
– Nick
Dec 3 at 4:16
add a comment |
1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
up vote
0
down vote
I'm no expert but I was running into the same undefined symbol trying to start sickbeard so I ran the following command as root:
scanelf -l -s sqlite3_transfer_bindings /lib/* /usr/* /opt/* | grep sqlite3_transfer_bindings
Which gave me this output:
ET_DYN sqlite3_transfer_bindings /usr/lib/i386-linux-gnu/libsqlite3.so.0.8.6
ET_DYN sqlite3_transfer_bindings /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6
So I set $LD_LIBRARY_PATH for my sickbeard user to equal /usr/lib/x86_64-linux-gnu
And I was able to run sickbeard.
So presumably you can run the same command and then adjust your LD_LIBRARY_PATH value accordingly.
answered Dec 1 at 23:59
TheDudeguy
1
New contributor
TheDudeguy is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
This worked (mostly)! I was having sudo-ing some of the plex commands a few days ago trying to force a media library update and messed with letting LD_LIBRARY_PATH. This appears to be the root of all of my problems. I've got most of it fixed, but I'm still getting errors when I type a command that doesn't exist (command-not-found is definitely still broken).
– Nick
Dec 3 at 4:16
add a comment |
up vote
0
down vote
I'm no expert but I was running into the same undefined symbol trying to start sickbeard so I ran the following command as root:
scanelf -l -s sqlite3_transfer_bindings /lib/* /usr/* /opt/* | grep sqlite3_transfer_bindings
Which gave me this output:
ET_DYN sqlite3_transfer_bindings /usr/lib/i386-linux-gnu/libsqlite3.so.0.8.6
ET_DYN sqlite3_transfer_bindings /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6
So I set $LD_LIBRARY_PATH for my sickbeard user to equal /usr/lib/x86_64-linux-gnu
And I was able to run sickbeard.
So presumably you can run the same command and then adjust your LD_LIBRARY_PATH value accordingly.
answered Dec 1 at 23:59
TheDudeguy
1
New contributor
TheDudeguy is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
This worked (mostly)! I was having sudo-ing some of the plex commands a few days ago trying to force a media library update and messed with letting LD_LIBRARY_PATH. This appears to be the root of all of my problems. I've got most of it fixed, but I'm still getting errors when I type a command that doesn't exist (command-not-found is definitely still broken).
– Nick
Dec 3 at 4:16
add a comment |
up vote
0
down vote
up vote
0
down vote
I'm no expert but I was running into the same undefined symbol trying to start sickbeard so I ran the following command as root:
scanelf -l -s sqlite3_transfer_bindings /lib/* /usr/* /opt/* | grep sqlite3_transfer_bindings
Which gave me this output:
ET_DYN sqlite3_transfer_bindings /usr/lib/i386-linux-gnu/libsqlite3.so.0.8.6
ET_DYN sqlite3_transfer_bindings /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6
So I set $LD_LIBRARY_PATH for my sickbeard user to equal /usr/lib/x86_64-linux-gnu
And I was able to run sickbeard.
So presumably you can run the same command and then adjust your LD_LIBRARY_PATH value accordingly.
answered Dec 1 at 23:59
TheDudeguy
1
New contributor
TheDudeguy is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
I'm no expert but I was running into the same undefined symbol trying to start sickbeard so I ran the following command as root:
scanelf -l -s sqlite3_transfer_bindings /lib/* /usr/* /opt/* | grep sqlite3_transfer_bindings
Which gave me this output:
ET_DYN sqlite3_transfer_bindings /usr/lib/i386-linux-gnu/libsqlite3.so.0.8.6
ET_DYN sqlite3_transfer_bindings /usr/lib/x86_64-linux-gnu/libsqlite3.so.0.8.6
So I set $LD_LIBRARY_PATH for my sickbeard user to equal /usr/lib/x86_64-linux-gnu
And I was able to run sickbeard.
So presumably you can run the same command and then adjust your LD_LIBRARY_PATH value accordingly.
answered Dec 1 at 23:59
TheDudeguy
1
New contributor
TheDudeguy is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
answered Dec 1 at 23:59
TheDudeguy
1
New contributor
TheDudeguy is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
answered Dec 1 at 23:59
TheDudeguy
1
answered Dec 1 at 23:59
TheDudeguy
1
1
New contributor
TheDudeguy is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
New contributor
TheDudeguy is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
TheDudeguy is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
This worked (mostly)! I was having sudo-ing some of the plex commands a few days ago trying to force a media library update and messed with letting LD_LIBRARY_PATH. This appears to be the root of all of my problems. I've got most of it fixed, but I'm still getting errors when I type a command that doesn't exist (command-not-found is definitely still broken).
– Nick
Dec 3 at 4:16
add a comment |
This worked (mostly)! I was having sudo-ing some of the plex commands a few days ago trying to force a media library update and messed with letting LD_LIBRARY_PATH. This appears to be the root of all of my problems. I've got most of it fixed, but I'm still getting errors when I type a command that doesn't exist (command-not-found is definitely still broken).
– Nick
Dec 3 at 4:16
This worked (mostly)! I was having sudo-ing some of the plex commands a few days ago trying to force a media library update and messed with letting LD_LIBRARY_PATH. This appears to be the root of all of my problems. I've got most of it fixed, but I'm still getting errors when I type a command that doesn't exist (command-not-found is definitely still broken).
– Nick
Dec 3 at 4:16
This worked (mostly)! I was having sudo-ing some of the plex commands a few days ago trying to force a media library update and messed with letting LD_LIBRARY_PATH. This appears to be the root of all of my problems. I've got most of it fixed, but I'm still getting errors when I type a command that doesn't exist (command-not-found is definitely still broken).
– Nick
Dec 3 at 4:16
add a comment |
Nick is a new contributor. Be nice, and check out our Code of Conduct.
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Nick is a new contributor. Be nice, and check out our Code of Conduct.
Nick is a new contributor. Be nice, and check out our Code of Conduct.
Nick is a new contributor. Be nice, and check out our Code of Conduct.
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Have you made any changes to your Python 3 setup?
– wjandrea
Nov 30 at 17:44
Nope. This morning I tried reinstalling python 3.6 (which completed successfully; didn't fix the problem), but I haven't made any config changes.
– Nick
Nov 30 at 18:52
Though I suppose Plex could have made changes on its own..
– Nick
Nov 30 at 18:52