Wrong logical/physical sector size can lead to file corruption?





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I'm experiencing continuous file corruption problems so I have to run fsck almost every time I start Ubuntu 16.04. :( :( :(



Recently, I bought a second new 1TB hard disk and reinstalled everything. After few days the problem was again there... the system boots but is not usable (today I've got a lot of folders mounted in read-only mode...)



I've made all the checks trying to detect an hardware problem (memtest, prime95, Gsmartcontrol, BIOS upgrade, etc) but I didn't find any fault. Also the temperature of the CPU is quite stable.



Could the adopted partitioning be the problem?



Disk /dev/sda: 931,5 GiB, 1000204886016 bytes, 1953525168 sectors
Units: sectors of 1 * 512 = 512 bytes
Sector size (logical/physical): 512 bytes / 4096 bytes
I/O size (minimum/optimal): 4096 bytes / 4096 bytes
Disklabel type: dos
Disk identifier: 0x583cc96a

Device Boot Start End Sectors Size Id Type
/dev/sda1 * 2048 7999487 7997440 3,8G 82 Linux swap / Solaris
/dev/sda2 8001534 1953523711 1945522178 927,7G 5 Extended
/dev/sda5 8001536 47060991 39059456 18,6G 83 Linux
/dev/sda6 47063040 1953523711 1906460672 909,1G 83 Linux

Partition 2 does not start on physical sector boundary.


I read that a misaligned logical/physical sector size can only impact
the performance. Nevertheless I read also some case of PCs not booting at all. Which is true?
Should I not waste further time and buy a new PC? :( :( :(










share|improve this question

























  • No, the Partition 2 does not start on physical sector boundary warning is harmless for an extended partition type; ignore it. My guess is you've got a bad cable, flaky disk controller hardware on the motherboard, or some other hardware problem. Another possibility is that you're not shutting down properly; you should always use a proper shutdown command, not just hit the computer's power button.

    – Rod Smith
    Nov 13 '16 at 15:43











  • @RodSmith - Hi Rod. I've checked visually the motherboard (ASRock N68-GS4 FX) and I didn't find any problem. I will do a double check now. I always shutdown the machine by using the proper command on the Ubuntu main menu.

    – gimpo
    Nov 13 '16 at 15:54








  • 1





    A visual check most likely won't detect a voltage fluctuation, microscopic fracture of a critical trace, failing chip, etc. It might or might not detect a poorly-seated connector, failing cable etc.

    – Rod Smith
    Nov 13 '16 at 16:11











  • @RodSmith - yeah, you're right. Now I've got the root partition in read-only mode... great day is today for me! There should be an error on boot record (fsck skips the root partition as a zero-length one). I've no other choice than buying a new PC, even if it is not an happy period for me from an economical point of view... :( :( :(

    – gimpo
    Nov 13 '16 at 17:47


















0















I'm experiencing continuous file corruption problems so I have to run fsck almost every time I start Ubuntu 16.04. :( :( :(



Recently, I bought a second new 1TB hard disk and reinstalled everything. After few days the problem was again there... the system boots but is not usable (today I've got a lot of folders mounted in read-only mode...)



I've made all the checks trying to detect an hardware problem (memtest, prime95, Gsmartcontrol, BIOS upgrade, etc) but I didn't find any fault. Also the temperature of the CPU is quite stable.



Could the adopted partitioning be the problem?



Disk /dev/sda: 931,5 GiB, 1000204886016 bytes, 1953525168 sectors
Units: sectors of 1 * 512 = 512 bytes
Sector size (logical/physical): 512 bytes / 4096 bytes
I/O size (minimum/optimal): 4096 bytes / 4096 bytes
Disklabel type: dos
Disk identifier: 0x583cc96a

Device Boot Start End Sectors Size Id Type
/dev/sda1 * 2048 7999487 7997440 3,8G 82 Linux swap / Solaris
/dev/sda2 8001534 1953523711 1945522178 927,7G 5 Extended
/dev/sda5 8001536 47060991 39059456 18,6G 83 Linux
/dev/sda6 47063040 1953523711 1906460672 909,1G 83 Linux

Partition 2 does not start on physical sector boundary.


I read that a misaligned logical/physical sector size can only impact
the performance. Nevertheless I read also some case of PCs not booting at all. Which is true?
Should I not waste further time and buy a new PC? :( :( :(










share|improve this question

























  • No, the Partition 2 does not start on physical sector boundary warning is harmless for an extended partition type; ignore it. My guess is you've got a bad cable, flaky disk controller hardware on the motherboard, or some other hardware problem. Another possibility is that you're not shutting down properly; you should always use a proper shutdown command, not just hit the computer's power button.

    – Rod Smith
    Nov 13 '16 at 15:43











  • @RodSmith - Hi Rod. I've checked visually the motherboard (ASRock N68-GS4 FX) and I didn't find any problem. I will do a double check now. I always shutdown the machine by using the proper command on the Ubuntu main menu.

    – gimpo
    Nov 13 '16 at 15:54








  • 1





    A visual check most likely won't detect a voltage fluctuation, microscopic fracture of a critical trace, failing chip, etc. It might or might not detect a poorly-seated connector, failing cable etc.

    – Rod Smith
    Nov 13 '16 at 16:11











  • @RodSmith - yeah, you're right. Now I've got the root partition in read-only mode... great day is today for me! There should be an error on boot record (fsck skips the root partition as a zero-length one). I've no other choice than buying a new PC, even if it is not an happy period for me from an economical point of view... :( :( :(

    – gimpo
    Nov 13 '16 at 17:47














0












0








0








I'm experiencing continuous file corruption problems so I have to run fsck almost every time I start Ubuntu 16.04. :( :( :(



Recently, I bought a second new 1TB hard disk and reinstalled everything. After few days the problem was again there... the system boots but is not usable (today I've got a lot of folders mounted in read-only mode...)



I've made all the checks trying to detect an hardware problem (memtest, prime95, Gsmartcontrol, BIOS upgrade, etc) but I didn't find any fault. Also the temperature of the CPU is quite stable.



Could the adopted partitioning be the problem?



Disk /dev/sda: 931,5 GiB, 1000204886016 bytes, 1953525168 sectors
Units: sectors of 1 * 512 = 512 bytes
Sector size (logical/physical): 512 bytes / 4096 bytes
I/O size (minimum/optimal): 4096 bytes / 4096 bytes
Disklabel type: dos
Disk identifier: 0x583cc96a

Device Boot Start End Sectors Size Id Type
/dev/sda1 * 2048 7999487 7997440 3,8G 82 Linux swap / Solaris
/dev/sda2 8001534 1953523711 1945522178 927,7G 5 Extended
/dev/sda5 8001536 47060991 39059456 18,6G 83 Linux
/dev/sda6 47063040 1953523711 1906460672 909,1G 83 Linux

Partition 2 does not start on physical sector boundary.


I read that a misaligned logical/physical sector size can only impact
the performance. Nevertheless I read also some case of PCs not booting at all. Which is true?
Should I not waste further time and buy a new PC? :( :( :(










share|improve this question
















I'm experiencing continuous file corruption problems so I have to run fsck almost every time I start Ubuntu 16.04. :( :( :(



Recently, I bought a second new 1TB hard disk and reinstalled everything. After few days the problem was again there... the system boots but is not usable (today I've got a lot of folders mounted in read-only mode...)



I've made all the checks trying to detect an hardware problem (memtest, prime95, Gsmartcontrol, BIOS upgrade, etc) but I didn't find any fault. Also the temperature of the CPU is quite stable.



Could the adopted partitioning be the problem?



Disk /dev/sda: 931,5 GiB, 1000204886016 bytes, 1953525168 sectors
Units: sectors of 1 * 512 = 512 bytes
Sector size (logical/physical): 512 bytes / 4096 bytes
I/O size (minimum/optimal): 4096 bytes / 4096 bytes
Disklabel type: dos
Disk identifier: 0x583cc96a

Device Boot Start End Sectors Size Id Type
/dev/sda1 * 2048 7999487 7997440 3,8G 82 Linux swap / Solaris
/dev/sda2 8001534 1953523711 1945522178 927,7G 5 Extended
/dev/sda5 8001536 47060991 39059456 18,6G 83 Linux
/dev/sda6 47063040 1953523711 1906460672 909,1G 83 Linux

Partition 2 does not start on physical sector boundary.


I read that a misaligned logical/physical sector size can only impact
the performance. Nevertheless I read also some case of PCs not booting at all. Which is true?
Should I not waste further time and buy a new PC? :( :( :(







partitioning hard-drive






share|improve this question















share|improve this question













share|improve this question




share|improve this question








edited Mar 24 at 12:17









anonymous2

3,38242149




3,38242149










asked Nov 13 '16 at 15:00









gimpogimpo

2617




2617













  • No, the Partition 2 does not start on physical sector boundary warning is harmless for an extended partition type; ignore it. My guess is you've got a bad cable, flaky disk controller hardware on the motherboard, or some other hardware problem. Another possibility is that you're not shutting down properly; you should always use a proper shutdown command, not just hit the computer's power button.

    – Rod Smith
    Nov 13 '16 at 15:43











  • @RodSmith - Hi Rod. I've checked visually the motherboard (ASRock N68-GS4 FX) and I didn't find any problem. I will do a double check now. I always shutdown the machine by using the proper command on the Ubuntu main menu.

    – gimpo
    Nov 13 '16 at 15:54








  • 1





    A visual check most likely won't detect a voltage fluctuation, microscopic fracture of a critical trace, failing chip, etc. It might or might not detect a poorly-seated connector, failing cable etc.

    – Rod Smith
    Nov 13 '16 at 16:11











  • @RodSmith - yeah, you're right. Now I've got the root partition in read-only mode... great day is today for me! There should be an error on boot record (fsck skips the root partition as a zero-length one). I've no other choice than buying a new PC, even if it is not an happy period for me from an economical point of view... :( :( :(

    – gimpo
    Nov 13 '16 at 17:47



















  • No, the Partition 2 does not start on physical sector boundary warning is harmless for an extended partition type; ignore it. My guess is you've got a bad cable, flaky disk controller hardware on the motherboard, or some other hardware problem. Another possibility is that you're not shutting down properly; you should always use a proper shutdown command, not just hit the computer's power button.

    – Rod Smith
    Nov 13 '16 at 15:43











  • @RodSmith - Hi Rod. I've checked visually the motherboard (ASRock N68-GS4 FX) and I didn't find any problem. I will do a double check now. I always shutdown the machine by using the proper command on the Ubuntu main menu.

    – gimpo
    Nov 13 '16 at 15:54








  • 1





    A visual check most likely won't detect a voltage fluctuation, microscopic fracture of a critical trace, failing chip, etc. It might or might not detect a poorly-seated connector, failing cable etc.

    – Rod Smith
    Nov 13 '16 at 16:11











  • @RodSmith - yeah, you're right. Now I've got the root partition in read-only mode... great day is today for me! There should be an error on boot record (fsck skips the root partition as a zero-length one). I've no other choice than buying a new PC, even if it is not an happy period for me from an economical point of view... :( :( :(

    – gimpo
    Nov 13 '16 at 17:47

















No, the Partition 2 does not start on physical sector boundary warning is harmless for an extended partition type; ignore it. My guess is you've got a bad cable, flaky disk controller hardware on the motherboard, or some other hardware problem. Another possibility is that you're not shutting down properly; you should always use a proper shutdown command, not just hit the computer's power button.

– Rod Smith
Nov 13 '16 at 15:43





No, the Partition 2 does not start on physical sector boundary warning is harmless for an extended partition type; ignore it. My guess is you've got a bad cable, flaky disk controller hardware on the motherboard, or some other hardware problem. Another possibility is that you're not shutting down properly; you should always use a proper shutdown command, not just hit the computer's power button.

– Rod Smith
Nov 13 '16 at 15:43













@RodSmith - Hi Rod. I've checked visually the motherboard (ASRock N68-GS4 FX) and I didn't find any problem. I will do a double check now. I always shutdown the machine by using the proper command on the Ubuntu main menu.

– gimpo
Nov 13 '16 at 15:54







@RodSmith - Hi Rod. I've checked visually the motherboard (ASRock N68-GS4 FX) and I didn't find any problem. I will do a double check now. I always shutdown the machine by using the proper command on the Ubuntu main menu.

– gimpo
Nov 13 '16 at 15:54






1




1





A visual check most likely won't detect a voltage fluctuation, microscopic fracture of a critical trace, failing chip, etc. It might or might not detect a poorly-seated connector, failing cable etc.

– Rod Smith
Nov 13 '16 at 16:11





A visual check most likely won't detect a voltage fluctuation, microscopic fracture of a critical trace, failing chip, etc. It might or might not detect a poorly-seated connector, failing cable etc.

– Rod Smith
Nov 13 '16 at 16:11













@RodSmith - yeah, you're right. Now I've got the root partition in read-only mode... great day is today for me! There should be an error on boot record (fsck skips the root partition as a zero-length one). I've no other choice than buying a new PC, even if it is not an happy period for me from an economical point of view... :( :( :(

– gimpo
Nov 13 '16 at 17:47





@RodSmith - yeah, you're right. Now I've got the root partition in read-only mode... great day is today for me! There should be an error on boot record (fsck skips the root partition as a zero-length one). I've no other choice than buying a new PC, even if it is not an happy period for me from an economical point of view... :( :( :(

– gimpo
Nov 13 '16 at 17:47










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